To run our code, you need to download data from two different sources
a) Download all source data and processed Summarized Experiment objects from Amazon S3 bucket.
b) These vignettes from the github directory.
Both the folder from Amazon s3 bucket (ie OriginalTCGAGTExData) and the folder containing vignettes (git repository) should be saved in the same folder. As an example, one could save both of the above folders under "Downloads" as shown below