by Joseph KliegmanMay 16 2019
Chief Scientist, Nextjournal

Seurat Environment

install.packages(c("Matrix", "Seurat"))
wget --progress=bar:force http://www.fftw.org/fftw-3.3.8.tar.gz -P /results
fftw-3.3.8.tar.gz
tar -zxvf 
fftw-3.3.8.tar.gz
cd /fftw-3.3.8
./configure
make
make install
git clone https://github.com/KlugerLab/FIt-SNE.git
cd FIt-SNE
g++ -std=c++11 -O3  src/sptree.cpp src/tsne.cpp src/nbodyfft.cpp  -o bin/fast_tsne -pthread -lfftw3 -lm
pwd