RELION Environment

apt-get -qq update
apt-get install build-essential git cmake \
  mpi-default-bin mpi-default-dev libfftw3-dev

rm -rf /relion-3.0_beta
git clone https://bitbucket.org/scheres/relion-3.0_beta.git

rm -rf /relion-3.0_beta/build
mkdir -p /relion-3.0_beta/build
cd relion-3.0_beta/build

cmake -DGUI=OFF -DCUDA_ARCH=37 \
  -DCMAKE_C_COMPILER=/usr/bin/mpicc -DCMAKE_CXX_COMPILER=/usr/bin/mpic++ \
  -DMPI_C_COMPILER=/usr/bin/mpicc -DMPI_CXX_COMPILER=/usr/bin/mpic++ \
  -DMPI_C=/etc/alternatives/libmpi.so -DMPI_CXX=/etc/alternatives/libmpi++.so \
  -DMPI_INCLUDE_PATH=/usr/include/openmpi \
  -DMPI_LIBRARIES=/usr/lib/x86_64-linux-gnu/ \
  -DMPI_CXX_INCLUDE_PATH=/usr/include/openmpi \
  -DMPI_CXX_LIBRARIES=/usr/lib/x86_64-linux-gnu/ \
  ..
make -j5
make install