Micah P. Dombrowski / Feb 05 2019
EMOD Setup
EMOD Setup
Institute for Disease Modeling
Institute for Disease Modeling
Required packages, from PrepareLinuxEnvironment.sh
. Link libmpich10
paths to current versions of the library—maybe this will work.
apt-get -qq update apt-get install libboost-mpi-dev scons mpich libmpich-dev xauth git-lfs pigz conda install pyyaml xlrd cd /usr/lib/x86_64-linux-gnu ln -fs libmpichcxx.so libmpichcxx.so.10 ln -fs libmpich.so libmpich.so.10 ln -fs libopa.so libopa.so.1 ln -fs libmpl.so libmpl.so.1
Clone EMOD, and untar the input data saved in the Appendix.
git clone https://github.com/InstituteforDiseaseModeling/EMOD cd EMOD git checkout v2.18.0 cd / pigz -dc EMOD-InputData.tar.gz↩ | tar -xf -
Link input data.
ln -s /EMOD-InputData /EMOD/InputData
Download the executable file, set +x.
cd /usr/local/bin wget https://github.com/InstituteforDiseaseModeling/EMOD/releases/download/v2.18.0/Eradication chmod +x Eradication